Function reference • gorr

All functions
`WorkflowJob()`	WorkflowJob class constructor
`category_delete()`	Delete a phenotype category
`create_category()`	Add a new category to this project.
`create_phenotype()`	Create a new phenotype in the current project.
`create_phenotype_matrix()`	Get a phenotype matrix object.
`create_playlist()`	Create a new playlist in the current project.
`get_access_token()`	Get an access token from a refresh token
`get_categories()`	A list of all categories available in the system.
`get_covariate()`	Get a single covariate by its id.
`get_covariates()`	Get all covariates in current project.
`get_data()`	Retrieve phenotype data or phenotype matrix data from the server.
`get_gorpipe()`	get_gorpipe
`get_job()`	Get a workflow job
`get_jobs()`	Get a list of jobs satisfying the supplied criteria
`get_jwt_token_payload()`	Decode a JWT token and extract payload
`get_phenotype()`	Get a specific phenotype in the current project.
`get_phenotype_matrix()`	Get a phenotype matrix object.
`get_phenotypes()`	A list of all/subset of phenotypes in the current project.
`get_phenotypes_data()`	Retrieve phenotype data from the server.
`get_phenotypes_dataframe()`	A dataframe of all/subset of phenotypes in the current project.
`get_pipelines()`	Returns the pipelines available on the current server
`get_playlist()`	Get playlist in the current project based on the playlist's name OR id.
`get_playlists()`	A list of all the playlists in the current project.
`get_tags()`	Get all tags
`gor_connect()`	Set up a connection object, and call the health endpoint to make sure everything is up and running on the server side
`gor_create()`	gor_create
`gor_define()`	GOR Define
`gor_knitr_setup()`	GOR Knitr Setup
`gor_query()`	Run a GOR query
`gorr`	GOR-R
`gorr__cat()`	Custom wrapper for cli::cat..()
`gorr__elapsed_time()`	Custom wrapper for formatted query progress messages
`gorr__failure()`	Custom wrapper for stop() with formated error messages
`gorr__get_query_results()`	Get server query results This is not a public function, but is called from `gorr__queryservice`
`gorr__get_query_status()`	Get query status from api. This is not a public function, but is called from `gorr__queryservice`
`gorr__get_response_body()`	Get response body, fail with an error if it has one
`gorr__info()`	Custom wrapper for message() with formatted messages
`gorr__kill_query()`	Kill remote query
`gorr__kill_stream()`	Kill remote query stream
`gorr__post_query()`	Post query to api. This is not a public function, but is called from `gor_query`
`gorr__queryserver()`	Get query from queryserver api. This is not a public function, but is called from `gor_query`
`gorr__queryservice()`	Get query from queryservice api. This is not a public function, but is called from `gor_query`
`gorr__reconnect()`	Reconnect using a connection object from `platform_connect`
`gorr__warning()`	Custom wrapper for warning() with formatted error messages
`phemat_add_phenotype()`	Add a new phenotype to the matrix request.
`phemat_add_phenotypes()`	Add multiple phenotypes to a phenotype matrix request.
`phemat_remove_phenotype()`	Remove a phenotype from the matrix request.
`phenotype_add_tag()`	Add a new tag/s to this phenotype.
`phenotype_add_tags()`	Add new tag/s phenotype.
`phenotype_connect()`	Set up a connection object, and call the phenotype-catalog endpoint to make sure everything is up and running on the server side
`phenotype_delete()`	Delete a phenotype, including all data from a project
`phenotype_delete_tag()`	Delete a tag/s from phenotype.
`phenotype_delete_tags()`	Delete tag/s from phenotype.
`phenotype_get_error()`	Retrieve latest error from phenotype query run
`phenotype_get_errors()`	Retrieve all errors for phenotype query runs
`phenotype_get_tags()`	Retrieve all tags for phenotype
`phenotype_plot()`	Plot phenotype
`phenotype_refresh()`	Refresh phenotype
`phenotype_set_tags()`	Set the tag/s for this phenotype, overriding previous tags
`phenotype_update()`	Update phenotype attributes
`phenotype_update_description()`	Update the phenotype with a new description
`phenotype_update_query()`	Update the phenotype with new query
`phenotype_upload_data()`	Upload phenotype data
`platform_connect()`	Set up a connection object, and call the health endpoint to make sure everything is up and running on the server side
`playlist_add_phenotype()`	Add phenotype to a playlist.
`playlist_add_phenotypes()`	Add phenotype/s to playlist
`playlist_delete()`	Delete a playlist from a project.
`playlist_delete_phenotypes()`	Delete phenotype/s from playlist
`playlist_refresh()`	Refresh playlist
`playlist_update_description()`	Update playlist's description
`playlist_update_phenotypes()`	Update playlist phenotypes
`plot__category()`	Plot categorical phenotypes. This is not a public function, but is called from `phenotype_plot`
`plot__qt()`	Plot quantitative phenotypes. This is not a public function, but is called from `phenotype_plot`
`plot__set()`	Plot set phenotypes. This is not a public function, but is called from `phenotype_plot`
`post_job()`	Run a workflow job
`workflow__is_running()`	Is the job currently running. This is not a public function
`workflow_check_status()`	Get current status of job
`workflow_inspect()`	Inspect a failed job for debugging.
`workflow_refresh()`	Refresh the local object of the serverside job object
`workflow_wait()`	Wait for a running job to complete.

Reference

All functions