A list of all/subset of phenotypes in the current project.

get_phenotypes(
  conn,
  tags = list(),
  limit = 100,
  pheno_names = list(),
  all_tags = list(),
  any_tags = list(),
  pn_count = NULL,
  categories = list(),
  states = list(),
  search = NULL,
  playlist = NULL,
  updated_at = NULL,
  result_types = list()
)

Arguments

conn: gor connection structure, create it using platform_connect
tags: Deprecated : Optional character, character vector or list of tags to filter for.
limit: Maximum number of results fetched (default: 100)
pheno_names: Only fetch phenotypes that are in a given list of phenotype names
all_tags: Only fetch phenotypes that have all tags in the given list of tags
any_tags: Fetch phenotypes that have any of the tags in the given list of tags
pn_count: Only list phenotypes that match the given pn counts. (include greater or less symbol in string eg ">10")
categories: Only fetch phenotypes in the given list of categories
states: Only fetch phenotypes in the given list of states
search: String of keywords to search for in phenotypes, such as name, categories and tags
playlist: Fetch a specific playlist of phenotypes by the playlist id
updated_at: Only fetch phenotypes that match the given dates. Example: >=2017-04-01 ┃ <=2012-07-04 ┃ 2016-04-30..2016-07-04
result_types: Only fetch phenotypes in the given list of result types

Value

List of phenotypes

Examples

if (FALSE) {
api_key <- Sys.getenv("GOR_API_KEY")
project <- Sys.getenv("GOR_PROJECT")
conn <- platform_connect(api_key, project)
phenotypes <- get_phenotypes(conn, limit=5)
}