Update phenotype attributes — phenotype_update • gorr

Update phenotype attributes

phenotype_update(
  phenotype,
  description = NULL,
  tags = list(),
  query = NULL,
  category = NULL,
  url = NULL
)

Arguments

phenotype: phenotype structure, create or get it using get_phenotype
description: phenotype description
tags: comma separated string of tags eg. "height,weight", list or character vector "c("height", "weight")
query: NOR query that defines this phenotype
category: category for the phenotype (must be defined in the project - see get_categories)
url: reference URL for the phenotype (to dataset or other reference)

Value

phenotype object

Examples

if (FALSE) {
api_key <- Sys.getenv("GOR_API_KEY")
project <- Sys.getenv("GOR_PROJECT")
conn <- platform_connect(api_key, project)
name <- "height"
phenotype <- get_phenotype(name, conn)
description <- "individual height"
phenotype <- update_phenotype(phenotype, description=decription)
}