Set up a connection object, and call the phenotype-catalog endpoint to make sure everything is up and running on the server side

Source: R/phenotype_connect.R

This method is depricated and will be removed in future versions

phenotype_connect(api_key = NULL, project = NULL, root_url = NULL)

Arguments

api_key

the api key from the /api-key-service endpoint of your CSA host through a browser

project

project name

root_url

root_url of the Query API to use, e.g. "http://localhost:1337". If left as NULL the function will try to get it from the environment variable GOR_API_ROOT_URL, otherwise it will take it from the iss part of the decoded JWT (api_key)

Value

returns a list with the connection data

Examples

if (FALSE) {
api_key <- "...paste from your /api-key-service/token endpoint..."
conn <- phenotype_connect(api_key, "test_project")

# or have phenotype_connect take the api_key from the environment variable GOR_API_KEY:
conn <- phenotype_connect(project = "test_project")

}