Get SNPs/variants within region

Source: R/setters_and_getters.R

get_snps_within_region()

get_snps_within_region(df, region, chr = NULL, xmin = NULL, xmax = NULL)

Arguments

df

data frame of association results with the columns CHR and POS
region

string representing the genetic region (e.g chr16:50693587-50734041)
chr

chromosome (e.g. chr16)
xmin

include variants with POS larger than xmin
xmax

include variants with POS smaller than xmax

Value

the variants within the requested region

Examples

if (FALSE) {
get_snps_within_region(dat, "chr16:50593587-50834041")
}