UKBB Crohns disease (ICD 10 code K50)

Source: R/data.R

Dataset retrieved from the UK biobank consisting of 2,799 crohn´s cases (K50) and 484,515 controls. The dataset has been filtered on variants with P <1e-03.

CD_UKBB

Format

A data frame with 26,824 rows and 10 variables:

CHROM

Chromosome, written as for example chr1 or 1

POS

genetic position of the variant

ID

Variant identifier, e.g. rsid

REF

Reference allele

ALT

Alternative allele

SE

Standard Error

P

P-value from Plink run, additive model, reggresion model GLM_FIRTH

OR

Odds Ratio

Max_Impact

Max variant impact (HIGH,MODERATE,LOW or LOWEST)

cohort_AF

variant allele frequency in the UKBB cohort)

Source

Crohn's UKBB ICD10 code K50 snps with pvalues below p1e-03